Index

C

change_detection_pipeline() (in module pareidolia.hic_utils)

coords_to_bins() (in module pareidolia.hic_utils)

D

detection_matrix() (in module pareidolia.hic_utils)

F

fill_nnz() (in module pareidolia.preprocess)

G

get_common_valid_bins() (in module pareidolia.preprocess) get_coolers() (in module pareidolia.io) get_min_contacts() (in module pareidolia.hic_utils)

get_nnz_union() (in module pareidolia.preprocess) get_sse_mat() (in module pareidolia.detection) get_win_density() (in module pareidolia.detection)

M

make_density_filter() (in module pareidolia.hic_utils) median_bg() (in module pareidolia.detection) module pareidolia pareidolia.cli pareidolia.detection pareidolia.hic_utils pareidolia.io pareidolia.preprocess pareidolia.stats

P

pareidolia module pareidolia.cli module pareidolia.detection module pareidolia.hic_utils module

pareidolia.io module pareidolia.preprocess module pareidolia.stats module preprocess_hic() (in module pareidolia.hic_utils) pval_to_tval() (in module pareidolia.stats)

R

reps_bg_diff() (in module pareidolia.detection)

T

tvals_to_pvals() (in module pareidolia.stats)

V

vals_to_percentiles() (in module pareidolia.stats)

vec_lm() (in module pareidolia.stats) vec_ttest() (in module pareidolia.stats)